Syed Danish Ali

Position title: Research Associate


Room 417, Building 1
One Gifford Pinchot Drive
Madison, WI 53726

Headshot of Danish

Program Affiliations

Biosystems Engineering

Education and Certificates

  • BS Electronics Engineering, 2013, Ghulam Ishaq Khan Institute of Engineering Sciences and Technology
  • Doctor of Philosophy in Engineering (Electronics Engineering), 2022, Jeonbuk National University

Fields of Interest

  •  Machine Learning


  •  Interpretable machine learning identification of arginine methylation sites
    SD Ali, H Tayara, KT Chong
    Computers in Biology and Medicine 147, 10576 2022
  • Identification of piRNA disease associations using deep learning
    SD Ali, H Tayara, KT Chong
    Computational and Structural Biotechnology Journal 20, 1208-1217 2022
  • Prediction of RNA 5-hydroxymethylcytosine modifications using deep learning
    SD Ali, JH Kim, H Tayara, K to Chong
    IEEE Access 9, 8491-8496 2021
  • Identification of functional piRNAs using a convolutional neural network
    SD Ali, W Alam, H Tayara, K Chong
    IEEE/ACM Transactions on Computational Biology and Bioinformatics 2020
  • A CNN-based RNA N6-methyladenosine site predictor for multiple species using heterogeneous features representation
    W Alam, SD Ali, H Tayara, K to Chong
    IEEE Access 8, 138203-138209 2020
  • iIM-CNN: Intelligent identifier of 6mA sites on different species by using convolution neural network
    A Wahab, SD Ali, H Tayara, KT Chong
    IEEE Access , 178577-178583 2019